Original paper

Dynamic Rearrangement and Directional Migration of Tubular Vacuoles are Required for the Asymmetric Division of the Arabidopsis Zygote.
Matsumoto H, Kimata Y, Higaki T, Higashiyama T, Ueda M (2021), Plant & Cell Physiology pcab075. DOI: 10.1093/pcp/pcab075

Dynamics of the cell fate specifications during female gametophyte development in Arabidopsis.
Susaki D, Suzuki T, Maruyama D, Ueda M, Higashiyama T, Kurihara D (2021),
PLoS Biol 19 (3): e3001123. DOI: 10.1371/journal.pbio.3001123

Mitochondrial dynamics and segregation during the asymmetric division of Arabidopsis zygotes.
Kimata Y, Higaki T, Kurihara D, Ando N, Matsumoto H, Higashiyama T, Ueda M (2020), Quant Plant Biol 1: e3, DOI: https://doi.org/10.1017/qpb.2020.4

A new role for histone demethylases in the maintenance of plant genome integrity.
Antunez-Sanchez J, Naish M, Ramirez-Prado JS, Ohno S, Huang Y, Dawson A, Opassathian K, Manza-Mianza D, Ariel F, Raynaud C, Wibowo A, Daron J, Ueda M, Latrasse D, Slotkin RK, Weigel D, Benhamed M, Gutierrez-Marcos J (2020), eLife 9: e58533, DOI: 10.7554/eLife.58533

Polar vacuolar distribution is essential for accurate asymmetric division of Arabidopsis zygotes.
Kimata Y, Kato T, Higaki T, Kurihara D, Yamada T, Segami S, Morita MT, Maeshima M, Hasezawa S, Higashiyama T, Tasaka M, Ueda M (2019), Proc Natl Acad Sci 116 (6) :2338-2343, DOI: 10.1073/pnas.1814160116

In Vitro Ovule Cultivation for Live-cell Imaging of Zygote Polarization and Embryo Patterning in Arabidopsis thaliana.
Kurihara D, Kimata Y, Higashiyama T, Ueda M (2017), JoVE (127): 55975, DOI: 10.3791/55975

Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
Ueda M, Aichinger E, Gong W, Groot E, Verstraeten I, Vu LD, De Smet I, Higashiyama T, Umeda M, Laux T (2017), Genes Dev 31 (6): 617-627, DOI: 10.1101/gad.292409.116

Cytoskeleton dynamics control the first asymmetric cell division in Arabidopsis zygote.
Kimata Y, Higaki T, Kawashima T, Kurihara D, Sato Y, Yamada T, Hasezawa S, Berger F, Higashiyama T, Ueda M (2016), Proc Natl Acad Sci 113(49):14157-14162, DOI: 10.1073/pnas.1613979113

Combination of Synthetic Chemistry and Live-Cell Imaging Identified a Rapid Cell Division Inhibitor in Tobacco and Arabidopsis thaliana.
Nambo M, Kurihara D, Yamada T, Nishiwaki-Ohkawa T, Kadofusa N, Kimata Y, Kuwata K, Umeda M, Ueda M (2016), Plant Cell Physiol 57 (11): 2255-2268, DOI: 10.1093/pcp/pcw140

Live-cell imaging and optical manipulation of Arabidopsis early embryogenesis.
Gooh K, Ueda M, Aruga K, Park J, Arata H, Higashiyama T, Kurihara D (2015), Dev Cell 34 (2): 242-51, DOI: 10.1016/j.devcel.2015.06.008

Rapid Elimination of the Persistent Synergid through a Cell Fusion Mechanism.
Maruyama D, Völz R, Takeuchi H, Mori T, Igawa T, Kurihara D, Kawashima T, Ueda M, Ito M, Umeda M, Nishikawa S, Groß-Hardt R, Higashiyama T (2015), Cell 161 (4): 907-18, DOI: 10.1016/j.cell.2015.03.018

Environment-sensitive fluorescent probe: a benzophosphole oxide with an electron-donating substituent.
Yamaguchi E, Wang C, Fukazawa A, Taki M, Sato Y, Sasaki T, Ueda M, Sasaki N, Higashiyama T, Yamaguchi S (2015), Angew Chem Int Ed Engl 54 (15): 4539-43, DOI: 10.1002/anie.201500229

A dual-color marker system for in vivo visualization of cell cycle progression in Arabidopsis.
Yin K, Ueda M, Takagi H, Kajihara T, Sugamata Aki S, Nobusawa T, Umeda-Hara C, Umeda M (2014) Plant J 80 (3): 541-52, DOI: 10.1111/tpj.12652

ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis.
Yoshiyama KO, Kobayashi J, Ogita N, Ueda M, Kimura S, Maki H, Umeda M (2013) EMBO Rep14 (9): 817-22, DOI: 10.1038/embor.2013.112

Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development.
Ueda M, Zhang Z, Laux T (2011) Dev Cell 20 (2): 264-70, DOI: 10.1016/j.devcel.2011.01.009

Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo.
Breuninger H, Rikirsch E, Hermann M, Ueda M, Laux T (2008), Dev Cell 14 (6): 867-76, DOI: 10.1016/j.devcel.2008.03.008

Review/Book chapter

What is quantitative plant biology?
Autran D, Bassel GW, Chae E, Ezer D, Ferjani A, Fleck C, Hamant O, Hartmann FP, Jiao Y, Johnston IG, Kwiatkowska D, Lim BL, Mahönen AP, Morris RJ, Mulder BM, Nakayama N, Sozzani R, Strader LC, Tusscher K, Ueda M, Wolf S. (2021),Quantitative Plant Biology 2: e10,DOI:https://doi.org/10.1017/qpb.2021.8

Intracellular dynamics and transcriptional regulations in plant zygotes: a case study of Arabidopsis.
Kimata Y & Ueda M (2020) Plant Reproduction 33: 89–96, DOI: 10.1007/s00497-020-00389-7

Live-Cell Imaging of Zygotic Intracellular Structures and Early Embryo Pattern Formation in Arabidopsis thaliana.
Ueda M, Kimata Y, Kurihara D (2020), Methods in Molecular Biology 2122, Humana press, DOI: 10.1007/978-1-0716-0342-0_4

New cues for body axis formation in plant embryos.
Ueda M & Berger F (2019), Curr Opin Plant Biol 47:16-21, DOI: 10.1016/j.pbi.2018.08.005

The origin of the plant body axis.
Ueda M, Laux T (2012), Curr Opin Plant Biol 15 (6): 578-84, DOI: 10.1016/j.pbi.2012.08.001