Selected Publications
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- Mayuki Tanaka#, Takeshi Yokoyama#, Hironori Saito#, Madoka Nishimoto, Kengo Tsuda, Naoyuki Sotta, Hideki Shigematsu, Mikako Shirouzu, Shintaro Iwasaki*, Takuhiro Ito*, and Toru Fujiwara*
Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1 at the A site.
Nature Chemical Biology (2024)
#equal contribution
- Junta Tomono#, Kosuke Asano#, Takuma Chiashi, Masato Suzuki, Masayuki Igarashi, Yoshiaki Takahashi, Yoshikazu Tanaka*, and Takeshi Yokoyama*.
Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside.
J Biochem (2024)
- Xuewei Zhao, Ding Ma, Kensuke Ishiguro, Hironori Saito, Shinichiro Akichika, Ikuya Matsuzawa, Mari Mito, Toru Irie, Kota Ishibashi, Kimi Wakabayashi, Yuriko Sakaguchi, Takeshi Yokoyama, Yuichiro Mishima, Mikako Shirouzu, Shintaro Iwasaki, Takeo Suzuki*, and Tsutomu Suzuki*
Glycosylation of queuosine in tRNAs contributes to optimal translation and post-embryonic growth in vertebrates
Cell 186(25) 5517-5535 (2023)
- Chisa Shiraishi, Akinobu Matsumoto*, Kazuya Ichihara, Taishi Yamamoto, Takeshi Yokoyama, Taisuke Mizoo, Atsushi Hatano, Masaki Matsumoto, Yoshikazu Tanaka, Eriko Matsuura-Suzuki, Shintaro Iwasaki, Shouji Matsushima, Hiroyuki Tsutsui, Keiichi I. Nakayama*
RPL3L-containing ribosomes determine translation elongation dynamics required for cardiac function.
Nature Communications 14(1):2131 (2023)
- Yuko Murayama, Haruhiko Ehara, Mari Aoki, Mie Goto, Takeshi Yokoyama, Shun-ichi Sekine.
Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase.
Science Advances. 9(6) eade7093 (2023)
- Hiromi Watari, Hiromu Kageyama, Nami Masubuchi, Hiroya Nakajima, Kako Onodera, Pamela J. Focia, Takumi Oshiro, Takashi Matsui, Yoshio Kodera, Tomohisa Ogawa, Takeshi Yokoyama, Makoto Hirayama, Kanji Hori, Douglas M. Freymann, Misa Imai, Norio Komatsu, Marito Araki*, Yoshikazu Tanaka*, Ryuichi Sakai*
A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation.
Nature Communications 13(1) (2022)
- Yoshiko Nakagawa, Howard C.-H. Shen, Yusuke Komi, Shinju Sugiyama, Takaaki Kurinomaru, Yuri Tomabechi, Elena Krayukhina, Kenji Okamoto, Takeshi Yokoyama, Mikako Shirouzu, Susumu Uchiyama, Megumi Inaba, Tatsuya Niwa, Yasushi Sako, Hideki Taguchi, Motomasa Tanaka
Amyloid conformation-dependent disaggregation in a reconstituted yeast prion system.
Nature Chemical Biology 18(3):321-331. (2022)
- Mutsuko Kukimoto-Niino, Kazushige Katsura, Rahul Kaushik, Haruhiko Ehara, Takeshi Yokoyama, Tomomi Uchikubo-Kamo, Reiko Nakagawa, Chiemi Mishima-Tsumagari, Mayumi Yonemochi, Mariko Ikeda, Kazuharu Hanada, Kam Y. J. Zhang, Mikako Shirouzu
Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex
Science Advances 7(30) eabg3147 (2021)
- Rie Umeda, Yuhkoh Satouh, Mizuki Takemoto, Yoshiko Nakada-Nakura, Kehong Liu, Takeshi Yokoyama, Mikako Shirouzu, So Iwata, Norimichi Nomura, Ken Sato, Masahito Ikawa, Tomohiro Nishizawa, Osamu Nureki
Structural insights into tetraspanin CD9 function
Nature Communications 11(1) (2020)
- Takeshi Yokoyama#, Kodai Machida#, Wakana Iwasaki#, Tomoaki Shigeta, Madoka Nishimoto, Mari Takahashi, Ayako Sakamoto, Mayumi Yonemochi, Yoshie Harada, Hideki Shigematsu, Mikako Shirouzu, Hisashi Tadakuma*, Hiroaki Imataka*, Takuhiro Ito*
HCV IRES Captures an Actively Translating 80S Ribosome
Molecular Cell 74(6) 1205-1214.e8 (2019)
#equal contribution
- Yongchan Lee, Pattama Wiriyasermkul, Chunhuan Jin, Lili Quan, Ryuichi Ohgaki, Suguru Okuda, Tsukasa Kusakizako, Tomohiro Nishizawa, Kazumasa Oda, Ryuichiro Ishitani, Takeshi Yokoyama, Takanori Nakane, Mikako Shirouzu, Hitoshi Endou, Shushi Nagamori, Yoshikatsu Kanai, Osamu Nureki
Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc
Nature Structural & Molecular Biology 26(6) 510-517 (2019)
- Kazuhiro Kashiwagi, Takeshi Yokoyama, Madoka Nishimoto, Mari Takahashi, Ayako Sakamoto, Mayumi Yonemochi, Mikako Shirouzu, Takuhiro Ito
Structural basis for eIF2B inhibition in integrated stress response
Science 364(6439) 495-499 (2019)
- Go Kasuya#, Takanori Nakane#, Takeshi Yokoyama#, Yanyan Jia, Masato Inoue, Kengo Watanabe, Ryoki Nakamura, Tomohiro Nishizawa, Tsukasa Kusakizako, Akihisa Tsutsumi, Haruaki Yanagisawa, Naoshi Dohmae, Motoyuki Hattori, Hidenori Ichijo, Zhiqiang Yan, Masahide Kikkawa, Mikako Shirouzu, Ryuichiro Ishitani*, Osamu Nureki*
Cryo-EM structures of the human volume-regulated anion channel LRRC8
Nature Structural & Molecular Biology 25(9) 797-804 (2018)
#equal contribution
- Haruhiko Ehara, Takeshi Yokoyama, Hideki Shigematsu, Shigeyuki Yokoyama, Mikako Shirouzu, Shun-ichi Sekine
Structure of the complete elongation complex of RNA polymerase II with basal factors
Science 357(6354) 921-924 (2017)
- Takeshi Yokoyama, Tanvir R Shaikh, Nobuhiro Iwakura, Hideko Kaji, Akira Kaji, Rajendra K Agrawal
Structural insights into initial and intermediate steps of the ribosome-recycling process
The EMBO Journal 31(7) 1836-1846 (2012)
- Takeshi Yokoyama, Tsutomu Suzuki
Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments
Nucleic Acids Research 36(11) 3539-3551 (2008)
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