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著書・論文
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- Makino T, Rubin CJ, Carneiro M, Axelsson E, Andersson L and Webster MT. (2018) Elevated proportions of deleterious genetic variation in domestic animals and plants. Genome Biology and Evolution. 10(1):276-290
- Sekine M and Makino T. (2017) Inference of causative genes for Alzheimer’s disease due to dosage imbalance. Molecular Biology and Evolution. 34(9):2396-2407
- Tamate SC, Iwasaki WM, Krysko KL, Composano B, Mori H, Funayama R, Nakayama K, Makino T and Kawata M. (2017) Inferring evolutionary responses of Anolis carolinensis introduced into the Ogasawara archipelago using whole genome sequence data. Scientific Reports. 7(1):18008.
- Tamagawa K, Makino T, and Kawata M. (2017) The effects of CpG densities around transcription start sites on sex-biased gene expression in Poecilia reticulata. Genome Biology and Evolution. 9(5):1204-1211
- Suzuki-Ohno Y, Morita K, Nagata N, Mori H, Abe S, Makino T, and Kawata M. (2017) Factors restricting the range expansion of the invasive green anole Anolis carolinensis on Okinawa Island, Japan. Ecology and Evolution. 7(12):4357-4366
- Yoshida K, Makino T and Kitano J. (2017) Accumulation of deleterious mutations on the neo-Y chromosome of Japan Sea stickleback (Gasterosteus nipponicus). Journal of Heredity. 108(1):63-68
- Akashi HD, Cádiz DA, Shigenobu S, Makino T and Kawata M. (2016) Differentially expressed genes associated with adaptation to different thermal environments in three sympatric Cuban Anolis lizards. Molecular Ecology. 25(10):2273-2285
- Sato PM, Makino T and Kawata M. (2016) Natural selection in a population of Drosophila melanogaster explained by changes in gene expression caused by sequence variation in core promoter regions. BMC Evolutionary Biology. 16(1):35
- Tamate CS, Kawata M and Makino T. (2014) Contribution of non-ohnologous duplicated genes to high habitat variability in mammals. Molecular Biology and Evolution. 31(7):1779-1786
- Yoshida K, Makino, T., Yamaguchi K, Shigenobu S, Hasebe M, Kawata M, Kume M, Mori S, Peichel CL, Toyoda A, Fujiyama A, and Kitano J. (2014) Sex chromosome turnover contributes to genomic divergence between incipient stickleback species. PLOS Genetics. 10(3):e1004223
- McLysaght A, Makino T, Grayton H, Tropeano M, Mitchell K, Vassos E, Collier DA. (2014) Ohnologs are overrepresented in pathogenic copy number mutations. PNAS. 111(1):361-366
- Makino T, McLysaght A and Kawata M. (2013) Genome-wide deserts for copy number variation in vertebrates. Nature Communications. 4:2283
- Cádiz, A, Nagata N, Katabuchi M, Díaz LM, LEchenique-Díaz LM, Akashi HD, Makino T and Kawata M. (2013) Relative importance of habitat use, range expansion, and speciation in local species diversity of Anolis lizards in Cuba. Ecosphere. 4:art78
- Makanae K, Kintaka R, Makino T, Kitano H and Moriya H. (2013) Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method. Genome Research. 23(2):300-311
- Makino T and McLysaght A. (2012) Positionally-biased gene loss after whole genome duplication: evidence from human, yeast and plant. Genome Research. 22(12):2427-2435
- Makino T and Kawata M. (2012) Habitat variability correlates with duplicate content of Drosophila genomes. Molecular Biology and Evolution. 29(10):3169-3179
- Satake M, Kawata M, McLysaght A and Makino T. (2012) Evolution of vertebrate tissues driven by differential modes of gene duplication. DNA Research. 19(4):305-316
- Pessia E, Makino T, Bailly-Bechet M, McLysaght A and Marais GAB. (2012) Mammalian X Chromosome Inactivation evolved as a dosage compensation mechanism for dosage-sensitive genes on the X chromosome. PNAS. 109(14), 5144-5145
- Tezuka A, Matsushima N, Nemoto Y, Akashi HD, Kawata M and Makino T. (2012) Comprehensive Primer Design for Analysis of Population Genetics in Non-Sequenced Organisms. PLoS ONE. 7(2): e32314
- Makino T and McLysaght A. (2010) Ohnologs in the human genome are dosage balanced and frequently associated with disease. PNAS. 107(20), 9270-9274
- Perez-Bercoff A, Makino T and McLysaght A. (2010) Duplicability of self-interacting human genes. BMC Evolutionary Biology. 10:160
- Makino T, Hokamp K and McLysaght A. (2009) The complex relationship of gene duplication and essentiality. Trends in Genetics. 25(4):152-155
- Akihito, Fumihito A, Ikeda Y, Aizawa M, Makino T, Umehara Y, Kai Y, Hasegawa M, Nakabo T and Gojobori T. (2008) Evolution of Pacific Ocean and the Sea of Japan populations of the gobiid species, Pterogobius elapoides and Pterogobius zonoleucus, based on molecular and morphological analyses. Gene. 427:7-18
- Makino T and McLysaght A. (2008) Interacting Gene Clusters and the Evolution of the Vertebrate Immune System. Molecular Biology and Evolution. 25:1855-1862
- Makino T, Suzuki Y, and Gojobori T. (2006) Differential evolutionary rates of duplicated genes in protein interaction network. Gene. 385:57-63
- Makino T and Gojobori T. (2006) The evolutionary rate of a protein is influenced by features of the interacting partners. Molecular Biology and Evolution. 23:784-789
- Kimura T, Makino T, Aburatani T, Kondo H, Karita S, Sakka K, Ohmiya K. (2000) Analysis of the Promoter Activity of the Taka-Amylase Gene and the Phosphoglycerate Kinase Gene in a Shoyu-koji Mold Aspergillus oryzae KBN616. Food Science and Technology Research. 6(1):44-47
- Kimura T, Ito J, Kawano A, Makino T, Kondo H, Karita S, Sakka K, Ohmiya K. (2000) Purification, characterization, and molecular cloning of acidophilic xylanase from Penicillium sp.40. Bioscience, biotechnology, and biochemistry. 64(6):1230-1237
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